PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03644.1.g00020.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 256aa    MW: 28687.8 Da    PI: 5.5626
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03644.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-1957110456
                                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Zpz_sc03644.1.g00020.1.sm.mk  57 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 110
                                   458**************9899********************************9 PP

2HD-ZIP_I/II125.22.9e-4055148193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                   e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aLk++ydal+++ e+L
  Zpz_sc03644.1.g00020.1.sm.mk  55 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKYDALHARVESL 135
                                   69******************999********************************************************** PP

                   HD-ZIP_I/II  81 ekeveeLreelke 93 
                                   ++e+ +L+++l+e
  Zpz_sc03644.1.g00020.1.sm.mk 136 KQEKLALAAQLHE 148
                                   ********99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-1846114IPR009057Homeodomain-like
PROSITE profilePS5007117.60551112IPR001356Homeobox domain
SMARTSM003898.6E-2054116IPR001356Homeobox domain
CDDcd000866.35E-1856113No hitNo description
PfamPF000463.8E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-2057119IPR009057Homeodomain-like
PRINTSPR000316.3E-78392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000316.3E-792108IPR000047Helix-turn-helix motif
PfamPF021831.3E-12112148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDRPDHHQHQ FFMPPAPVQP QPQAQEFCVP TMDAEQSFLV GRGGAGGGGA TGRGERKRRF  60
TEEQIRSLES MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR SKQLEHDYAA  120
LKSKYDALHA RVESLKQEKL ALAAQLHERS ERLREREDRA RSSGAAAATP SSSSCNGGGE  180
EEVEDDKRNI LAGCVDMDPP ESCVLGGPCA TPADVSVDSE YDDHHVDYDH VFPESFCAAT  240
PELWEPWPLV EWNAVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-123PREDICTED: homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK01e-98HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-98HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLK3Y8K81e-121K3Y8K8_SETIT; Uncharacterized protein
STRINGSi010550m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-27homeobox 7